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Filter Categories

The Subjects page allows you to create simple or complex filters to view the subjects that match the criteria you've chosen.

Filter categories and options are available within the Standard tab, as seen in below: Filter Categories

And within the Advanced tab, as seen here: Advanced Filter Categories

Clicking the "+" beside each category will open the options available for further selection and filtering.

Demographics

Birth Sex

  • Male
  • Female
  • Unknown

Subject Age

  • Lower
  • Upper Subject

Living Status

  • Living
  • Deceased

Subject Zip Code (1-5 digits separated with commas)

Subject Race

Subject Ethnicity

Subject Tags - Subject Tags are a special label placed on FHIR data.


Subject Identifiers

(Many of these filter options are disabled in masked mode . Clicking this icon in the top right corner of the screen will put you into unmasked mode where you can view these filter options and the data that corresponds with it.)

Subject Name

Subject Email

Subject Identifier


Surveys

Survey Assignment

This clip illustrates some of the options available under Surveys.

Survey Status

  • Assigned Survey

    • Dropdown menu with all surveys in the project
    • All versions of the survey? (If unchecked, you can select what versions of the survey you want to specifically view)
  • Assignment Count

    • Lower and Upper Value boxes (E.g., filtering subjects who have been assigned 1-3 instances of version 1.0 of survey "X")

Survey Status

  • Survey dropdown menu with all surveys in the project
  • All versions of the survey? checkbox
    • Checked = filter on all the versions of the assigned survey
    • Unchecked = A Survey versions dropdown menu lets you select the major and minor versions of the survey to filter on

Survey Status checkboxes

  • Not Started
  • In Progress
  • Completed

Filter By Date toggle (Days Ago or Start Date/End Date)

  • After X Days Ago (Relative box checked)/ Start Date (Relative box unchecked)
  • Before X Days Ago (Relative box checked)/ End Date (Relative box unchecked)

Survey Results

Here you can filter your subjects based on how they answered a specific survey question.

  • Survey dropdown - Select the survey
  • Survey Question - Select the survey question of interest
    • Aggregation
      • Average Response
      • Maximum Response
      • Minimum Response
    • Answer - Select the survey answer you want to filter on

Filter your subjects based on the consent and their consent completion status.

Consent Versions

  • Consent Version dropdown menu - Select the major version of the consent
  • Consent Minor Version - After selecting the Major Version, you can select any minor versions you want to filter on

Consent Status checkboxes

  • Pending
  • Active
  • Rejected

Filter By Date toggle (Days Ago or Start Date/End Date)

  • After X Days Ago (Relative box checked)/ Start Date (Relative box unchecked)
  • Before X Days Ago (Relative box checked)/ End Date (Relative box unchecked)

LIFE Extend

  • Checkbox to filter subjects who have used LIFE Extend

Cohorts

  • Filter for subjects in cohort dropdown menu

Conditions

  • Search box for Subject Conditions

Procedures

  • Search box for Subject Procedures

Medications

  • Search box for Subject Medications

Observations

Subject Observations search box

Filter By Date toggle (Days Ago or Start Date/End Date)

  • After X Days Ago (Relative box checked)/ Start Date (Relative box unchecked)
  • Before X Days Ago (Relative box checked)/ End Date (Relative box unchecked)

Subject Observation Value

This search box appears if the Filter By Date toggle is on. It allows you to select an observation type, comparison operator (=, !=, >), and input the comparison value.


Specimen Samples

  • Specimen Availability checkbox - filters only subjects with specimen samples

  • Subject Specimen Types search box


Omics Availability

  • Sequence Availability
    • Somatic
    • Germline
  • Omics Test Availability - Omics Test dropdown menu

Short Genetic Variants

  • Gene Sets dropdown menu - allows you to make multiple selections
  • Genes search box allowing you to input multiple values separated by a comma
  • Sequence Type dropdown menu - you can make multiple selections
    • Germline
    • Somatic
  • Zygosity dropdown menu - allows you to make multiple selections
    • Heterozygous
    • Homozygous
    • Reference
  • Protein Change search box - list of gene variant pairs
  • Coding Effect dropdown menu - allows you to make multiple selections
    • Frameshift
    • Splice site
    • Stop lost
    • Start lost
    • Nonsense
    • Inframe
  • dbSNP rs ID search box - allows you to list multiple values when separated with a comma
  • COSMIC ID search box - allows you to list multiple values when separated with a comma
  • COSMIC Minimum Count search box - allows you to list multiple values when separated with a comma
  • ClinVar Significance dropdown menu - allows you to make multiple selections
    • Pathogenic
    • Likely Pathogenic
    • Pathogenic/Likely Pathogenic
    • Likely Benign
    • Benign
    • Benign/Likely Benign
    • Uncertain Significance
    • Not Provided
    • Association
    • Conflicting Interpretations
    • Risk Factor
    • Drug Response
  • Pop Freq (gnomAD) (Min/Max values)
  • Maximum Across Populations (Min/Max values)

Copy Number Variants

  • Gene Sets dropdown menu - you can make multiple selections
  • Genes search box - you can input multiple values, separating them with a comma
  • Sequence Type dropdown menu - you can make multiple selections
    • Germline
    • Somatic
  • Copy Number dropdown menu - you can make multiple selections
    • Amplification
    • Gain
    • Neutral
    • Partial Loss
    • Loss

Structural Variants

  • Gene Sets dropdown menu - you can make multiple selections
  • Genes search box - you can input multiple values with a comma
  • Sequence Type dropdown menu - you can make multiple selections
    • Germline
    • Somatic
  • Effect - you can make multiple selections
    • Fusion
    • Rearrangement
    • Truncation
    • Deletion
    • Duplication
  • In Frame - you can make multiple selections
    • Yes
    • No
    • Unknown
  • Lab Reported Significance - you can make multiple selections
    • Pathogenic
    • Likely pathogenic
    • Uncertain significance
    • Other

Gene Expression

  • Gene Sets dropdown menu - you can make multiple selections
  • Genes - you can input multiple values when separating with a comma
  • Sequence Type - you can make multiple selections
    • Germline
    • Somatic
  • Expression Level - Min/Max value boxes
  • Outliers
    • Project Samples dropdown menu
    • Not applicable/diseases/tissues - If nothing is selected in the above Project Samples drop down, this dropdown will say "not applicable", but if you select a Project sample, this dropdown menu will show more options for further filtering based on the listed diseases and tissues
    • No. of std deviations textbox
    • Above the mean/Below the mean/Above the median/Below the median dropdown menu

Last update: July 10, 2020