The following steps will demonstrate how a simple workflow may be run that generates an index for a BAM file using the UI.
Generate and upload the master CWL¶
- Generate a master CWL file as described here Here is a sample master CWL
- Generate a step CWL file as described here Here is a sample step CWL
NOTE: Instead of using the
cli to upload the files, the file service UI provides upload functionality.
Go to the Add Workflow View¶
Enter a name for the workflow and press
Select the master CWL file from file service and press
Select any file inputs and enter any string inputs the workflow requires and press
Select any CWL dependency files, if needed, and press
Review the workflow run settings and press
Startif all looks well or
Backto correct any values
And that's it, the workflow is running. You can go to the Automation view to see the list of workflows and select the one you've started to look at in detail.