PHC SDK for Python¶

Source location - lifeomic/phc-sdk-py

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

0.13.0 - 2020-04-17¶

Added¶

• Switched build over to github actions

0.12.3 - 2020-04-13¶

Added¶

• Adds dsl and sql methods to phc.services.Fhir

Changed¶

• Deprecates execute_sql and execute_es methods in phc.services.Fhir

0.12.2 - 2020-03-25¶

Fixed¶

• Added retries to file download requests

0.12.1 - 2020-03-25¶

Fixed¶

• Fixed retry logic to include OS level errors.

0.12.0 - 2020-03-23¶

Added¶

• Added retry support for failed API requests.

0.11.0 - 2020-03-17¶

Added¶

• Added the trust_env parameter to all service classes to enable http proxy support.

0.10.0 - 2020-03-10¶

Added¶

• Added execute_sql to phc.services.Analytics.

0.9.2 - 2020-02-19¶

Added¶

• Added scroll support to phc.services.Fhir via the scroll param.

0.9.1 - 2019-12-17¶

Changed¶

• Fixed phc.services.Genomics.Status enum.

0.9.0 - 2019-12-16¶

Changed¶

• Added phc.services.Genomics for performing genomic related operations.

0.8.1 - 2019-11-27¶

Changed¶

• In Analytics.load_data_lake_result_to_dataframe increased the amount of time it takes to wait for a results file.

0.8.0 - 2019-11-25¶

Added¶

• Added Analytics.list_data_lake_schemas to fetch the schemas of each data lake table.
• Added Analytics.get_data_lake_schema to fetch the schema of a single data lake table.
• Added Analytics.execute_data_lake_query_to_dataframe to execute a data lake query and load the results to a Pandas dataframe.
• Added Analytics.load_data_lake_result_to_dataframe to load the results of a previously executed data lake query to a Pandas dataframe.
• Added Files.exists to check if a file exists.

0.7.1 - 2019-11-21¶

Fixed¶

• Fixed issue with Files.download to create target directories if they do not exist.

0.7.0 - 2019-11-20¶

Added¶

• Added optional pandas setup install
• Added ApiResponse.get_as_dataframe to return a response item as a Pandas DataFrame.

0.6.0 - 2019-11-01¶

Added¶

• Added the phc.services.Files submodule that provides actions for files in PHC projects.
• Added the phc.services.Cohorts submodule that provides actions for files in PHC cohorts.